%0 Journal Article %A Gamez Pozo, A. %A Trilla Fuentes, L. %A Berges Soria, J. %A Selevsek, N. %A López Vacas, R. %A Díaz Almiron, M. %A Nanni,, P. %A Arevalillo, J. M. %A Navarro, H. %A Grossmann, J. %A Moreno, F. G. %A Rioja, R. G. %A Prado Vazquez, G. %A Zapater Moros, A. %A Main Yaque, Paloma %A Feliu, J. %A Del Prado, P. %A Zamora, P. %A Ciruelos Gil, Eva María %A Espinosa, E. %A Vara, J. A.F. %T Functional proteomics outlines the complexity of breast cancer molecular subtypes %D 2017 %@ 2045-2322 %U https://hdl.handle.net/20.500.14352/18103 %X Breast cancer is a heterogeneous disease comprising a variety of entities with various genetic backgrounds. Estrogen receptor-positive, human epidermal growth factor receptor 2-negative tumors typically have a favorable outcome; however, some patients eventually relapse, which suggests some heterogeneity within this category. In the present study, we used proteomics and miRNA profiling techniques to characterize a set of 102 either estrogen receptor-positive (ER+)/progesterone receptorpositive (PR+) or triple-negative formalin-fixed, paraffin-embedded breast tumors. Protein expressionbased probabilistic graphical models and flux balance analyses revealed that some ER+/PR+ samples had a protein expression profile similar to that of triple-negative samples and had a clinical outcome similar to those with triple-negative disease. This probabilistic graphical model-based classification had prognostic value in patients with luminal A breast cancer. This prognostic information was independent of that provided by standard genomic tests for breast cancer, such as MammaPrint, OncoType Dx and the 8-gene Score. %~