RT Journal Article T1 Automatic Counting of Microglial Cells in Healthy and Glaucomatous Mouse Retinas A1 Gracia Pacheco, Pablo de A1 Gallego Collado, Beatriz Isabel A1 Rojas López, María Blanca A1 Ramírez Sebastián, Ana Isabel A1 Hoz Montañana, María Rosa De A1 Salazar Corral, Juan José A1 Triviño Casado, Alberto A1 Ramírez Sebastián, José Manuel AB Proliferation of microglial cells has been considered a sign of glial activation and a hallmark of ongoing neurodegenerative diseases. Microglia activation is analyzed in animal models of different eye diseases. Numerous retinal samples are required for each of these studies to obtain relevant data of statistical significance. Because manual quantification of microglial cells is time consuming, the aim of this study was develop an algorithm for automatic identification of retinal microglia. Two groups of adult male Swiss mice were used: age-matched controls (naïve, n = 6) and mice subjected to unilateral laser-induced ocular hypertension (lasered; n = 9). In the latter group, both hypertensive eyes and contralateral untreated retinas were analyzed. Retinal whole mounts were immunostained with anti Iba-1 for detecting microglial cell populations. A new algorithm was developed in MATLAB for microglial quantification; it enabled the quantification of microglial cells in the inner and outer plexiform layers and evaluates the area of the retina occupied by Iba-1+ microglia in the nerve fiber-ganglion cell layer. The automatic method was applied to a set of 6,000 images. To validate the algorithm, mouse retinas were evaluated both manually and computationally; the program correctly assessed the number of cells (Pearson correlation R = 0.94 and R = 0.98 for the inner and outer plexiform layers respectively). Statistically significant differences in glial cell number were found between naïve, lasered eyes and contralateral eyes (P<0.05, naïve versus contralateral eyes; P<0.001, naïve versus lasered eyes and contralateral versus lasered eyes). The algorithm developed is a reliable and fast tool that can evaluate the number of microglial cells in naïve mouse retinas and in retinas exhibiting proliferation. The implementation of this new automatic method can enable faster quantification of microglial cells in retinal pathologies. PB Public Library of Science SN 1932-6203 YR 2015 FD 2015-11-18 LK https://hdl.handle.net/20.500.14352/24694 UL https://hdl.handle.net/20.500.14352/24694 LA eng NO Gracia Pacheco, P., Gallego Collado, B. I., Rojas López, M. B. et al. «Automatic Counting of Microglial Cells in Healthy and Glaucomatous Mouse Retinas». PLOS ONE, vol. 10, n.o 11, noviembre de 2015, p. e0143278. PLoS Journals, https://doi.org/10.1371/journal.pone.0143278. NO Ministerio de Economía, Comercio y Empresa (España) NO Instituto de Salud Carlos III NO Science Foundation Arizona NO Fondo Europeo de Desarrollo Regional DS Docta Complutense RD 6 abr 2025