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00925njm 22002777a 4500 dc Theissinger, Kathrin author Fernandes, Carlos author Formenti, Giulio author Bista, Iliana author Berg, Paul R. author Bleidorn, Christoph author Bombarely, Aureliano author Crottini, Angelica author Gallo, Guido R. author Godoy, José A. author Jentoft, Sissel author Malukiewicz, Joanna author Mouton, Alice author Oomen, Rebekah A. author Paez, Sadye author Palsbøll, Per J. author Pampoulie, Christophe author Ruiz-López, María J. author Secomandi, Simona author Svardal, Hannes author Theofanopoulou, Constantina author de Vries, Jan author Waldvogel, Ann-Marie author Zhang, Guojie author Jarvis, Erich D. author Bálint, Miklós author Ciofi, Claudio author Waterhouse, Robert M. author Mazzoni, Camila J. author Höglund, Jacob author Aghayan, Sargis A. author Alioto, Tyler S. author Almudi, Isabel author Alvarez, Nadir author Alves, Paulo C. author Amorim do Rosario, Isabel R. author Antunes, Agostinho author Arribas, Paula author Baldrian, Petr author Bertorelle, Giorgio author Böhne, Astrid author Bonisoli Alquati, Andrea author Boštjančić, Ljudevit L. author Boussau, Bastien author Breton, Catherine M. author Buzan, Elena author Campos, Paula F. author Carreras, Carlos author Castro, L. FIlipe C. author Chueca, Luis J. author Čiampor, Fedor author Conti, Elena author Cook Deegan, Robert author Croll, Daniel author Cunha, Mónica V. author Delsuc, Frédéric author Dennis, Alice B. author Dimitrov, Dimitar author Faria, Rui author Favre, Adrien author Fedrigo, Olivier D. author Fernández, Rosa author Ficetola, Gentile Francesco author Flot, Jean François author Gabaldón, Toni author Agius, Dolores R. author Giani, Alice M. author Gilbert, M. Thomas P. author Grebenc, Tine author Guschanski, Katerina author Guyot, Romain author Hausdorf, Bernhard author Hawlitschek, Oliver author Heintzman, Peter D. author Heinze, Berthold author Hiller, Michael author Husemann, Martin author Iannucci, Alessio author Irisarri, Iker author Jakobsen, Kjetill S. author Klinga, Peter author Kloch, Agnieszka author Kratochwil, Claudius F. author Kusche, Henrik author Layton, Kara K.S. author Leonard, Jennifer A. author Lerat, Emmanuelle author Liti, Gianni author Manousaki, Tereza author Marques Bonet, Tomas author Matos Maraví, Pável author Matschiner, Michael author Maumus, Florian author Mc Cartney, Ann M. author Meiri, Shai author Melo-Ferreira, José author Mengual, Ximo author Monaghan, Michael T. author Montagna, Matteo author Mysłajek, Robert W. author Neiber, Marco T. author Nicolas, Violaine author Novo Rodríguez, Marta author Ozretić, Petar author Palero, Ferran author Pârvulescu, Lucian author Pascual, Marta author Paulo, Octávio S. author Pavlek, Martina author Pegueroles, Cinta author Pellissier, Loïc author Pesole, Graziano author Primmer, Craig R. author Riesgo, Ana author Rüber, Lukas author Rubolini, Diego author Salvi, Daniele author Seehausen, Ole author Seidel, Matthias author Studer, Bruno author Theodoridis, Spyros author Thines, Marco author Urban, Lara author Vasemägi, Anti author Vella, Adriana author Vella, Noel author Vernes, Sonja C. author Vernesi, Cristiano author Vieites, David R. author Wheat, Christopher W. author Wörheide, Gert author Wurm, Yannick author Zammit, Gabrielle author 2023 The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics. Theissinger, K., Fernandes, C., Formenti, G., Bista, I., Berg, P. R., Bleidorn, C., Bombarely, A., Crottini, A., Gallo, G. R., Godoy, J. A., Jentoft, S., Malukiewicz, J., Mouton, A., Oomen, R. A., Paez, S., Palsbøll, P. J., Pampoulie, C., Ruiz-López, M. J., Secomandi, S., … Zammit, G. (2023). How genomics can help biodiversity conservation. Trends in Genetics, 39(7), 545-559. https://doi.org/10.1016/j.tig.2023.01.005 0168-9525 10.1016/j.tig.2023.01.005 https://hdl.handle.net/20.500.14352/121553 https://doi.org/10.1016/j.tig.2023.01.005 36801111 https://www.sciencedirect.com/science/article/pii/S0168952523000203 How genomics can help biodiversity conservation