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oai:docta.ucm.es:20.500.14352/425912023-08-27T08:59:16Zcom_20.500.14352_14col_20.500.14352_15

00925njm 22002777a 4500 dc Faísca, Patrícia F.N. author Travasso, Rui D. M. author Parisi, Andrea author Rey Gayo, Antonio author 2012-04-27 For almost 15 years, the experimental correlation between protein folding rates and the contact order parameter has been under scrutiny. Here, we use a simple simulation model combined with a native-centric interaction potential to investigate the physical roots of this empirical observation. We simulate a large set of circular permutants, thus eliminating dependencies of the folding rate on other protein properties (e.g. stability). We show that the rate-contact order correlation is a consequence of the fact that, in high contact order structures, the contact order of the transition state ensemble closely mirrors the contact order of the native state. This happens because, in these structures, the native topology is represented in the transition state through the formation of a network of tertiary interactions that are distinctively long-ranged. 1932-6203 10.1371/journal.pone.0035599 https://hdl.handle.net/20.500.14352/42591 http://journals.plos.org/plosone/ http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035599 Why Do Protein Folding Rates Correlate with Metrics of Native Topology?