Enhancement of Cryo-EM maps by a multiscale tubular filter
dc.contributor.author | Vargas Balbuena, Javier | |
dc.contributor.author | Gómez Pedrero, José Antonio | |
dc.contributor.author | Quiroga Mellado, Juan Antonio | |
dc.contributor.author | Alonso Fernández, José | |
dc.date.accessioned | 2023-06-22T10:40:44Z | |
dc.date.available | 2023-06-22T10:40:44Z | |
dc.date.issued | 2022-01-31 | |
dc.description | © 2022 Optica Publishing Group. Funding. Ministerio de Ciencia e Innovación (PID2019-108850RA-I00). | |
dc.description.abstract | We present an approach to enhance cryo-electron microscopy (cryo-EM) postprocessed maps based on a multiscale tubular filter. The method determines a tubularness measure locally by the analysis of the eigenvalues of the Hessian matrix. This information is used to enhance elongated local structures and to attenuate blob-like and plate-like structures. The approach, thus, introduces a priori information in the reconstructions to improve their interpretability and analysis at high-resolution. The proposed method has been tested with simulated and real cryo-EM maps including recent reconstructions of the SARS-CoV-2. Our results show that our methods can improve obtained reconstructions. | |
dc.description.department | Depto. de Óptica | |
dc.description.faculty | Fac. de Ciencias Físicas | |
dc.description.refereed | TRUE | |
dc.description.sponsorship | Ministerio de Ciencia e Innovacion (MICINN) | |
dc.description.status | pub | |
dc.eprint.id | https://eprints.ucm.es/id/eprint/70705 | |
dc.identifier.doi | 10.1364/OE.444675 | |
dc.identifier.issn | 1094-4087 | |
dc.identifier.officialurl | http://dx.doi.org/10.1364/OE.444675 | |
dc.identifier.relatedurl | https://opg.optica.org | |
dc.identifier.uri | https://hdl.handle.net/20.500.14352/71328 | |
dc.issue.number | 3 | |
dc.journal.title | Optics express | |
dc.language.iso | eng | |
dc.page.final | 4527 | |
dc.page.initial | 4515 | |
dc.publisher | The Optical Society of America | |
dc.relation.projectID | PID2019-108850RA-I00 | |
dc.rights | Atribución 3.0 España | |
dc.rights.accessRights | open access | |
dc.rights.uri | https://creativecommons.org/licenses/by/3.0/es/ | |
dc.subject.cdu | 535 | |
dc.subject.keyword | Resolution | |
dc.subject.ucm | Óptica (Física) | |
dc.subject.unesco | 2209.19 Óptica Física | |
dc.title | Enhancement of Cryo-EM maps by a multiscale tubular filter | |
dc.type | journal article | |
dc.volume.number | 30 | |
dspace.entity.type | Publication | |
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relation.isAuthorOfPublication | 5c5cb6be-771c-40ed-8af0-cdfdbdfb3d36 | |
relation.isAuthorOfPublication | 1c171089-8e25-448f-bcce-28d030f8f43a | |
relation.isAuthorOfPublication | f7b5b178-742c-418d-80d3-769a169f6dd9 | |
relation.isAuthorOfPublication.latestForDiscovery | 6ccb1e60-8b61-4b23-8a0a-09af30f7b795 |
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