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Keeping modelling notebooks with TRACE: Good for you and good for environmental research and management support

dc.contributor.authorAyllón, Daniel
dc.contributor.authorRailsback, Steven F.
dc.contributor.authorGallager, Cara
dc.contributor.authorAugusiak, Jacqueline
dc.contributor.authorBaveco, Hans
dc.contributor.authorBerger, Uta
dc.contributor.authorCharles, Sandrine
dc.contributor.authorMartin, Romina
dc.contributor.authorFocks, Andrea
dc.contributor.authorGalic, Nika
dc.contributor.authorLiu, Chun
dc.contributor.authorVan Loon, E. Emiel
dc.contributor.authorNabe-Nielsen, Jacob
dc.contributor.authorPiou, Cyril
dc.contributor.authorPolhill, J. Gareth
dc.contributor.authorPreuss, Thomas G.
dc.contributor.authorRadchuk, Viktoriia
dc.contributor.authorSchmolke, Amelie
dc.contributor.authorStadnicka-Michalak, Julita
dc.contributor.authorTorbeck, Pernille
dc.contributor.authorGrimm, Volker
dc.date.accessioned2023-06-17T09:06:31Z
dc.date.available2023-06-17T09:06:31Z
dc.date.issued2020-11-21
dc.description.abstractThe acceptance and usefulness of simulation models are often limited by the efficiency, transparency, reproducibility, and reliability of the modelling process. We address these issues by suggesting that modellers (1) “trace” the iterative modelling process by keeping a modelling notebook corresponding to the laboratory notebooks used by empirical researchers, (2) use a standardized notebook structure and terminology based on the existing TRACE documentation framework, and (3) use their notebooks to compile TRACE documents that supplement publications and reports. These practices have benefits for model developers, users, and stakeholders: improved and efficient model design, analysis, testing, and application; increased model acceptance and reuse; and replicability and reproducibility of the model and the simulation experiments. Using TRACE terminology and structure in modelling notebooks facilitates production of TRACE documents. We explain the rationale of TRACE, provide example TRACE documents, and suggest strategies for keeping “TRACE Modelling Notebooks.”
dc.description.departmentDepto. de Biodiversidad, Ecología y Evolución
dc.description.facultyFac. de Ciencias Biológicas
dc.description.refereedTRUE
dc.description.sponsorshipMinisterio de Economía y Competitividad (MINECO)
dc.description.sponsorshipUniversité de Lyon ((UdL)/Agence Nationale de la Recherche (ANR)
dc.description.sponsorshipAgence Nationale de la Recherche (ANR)-JCJC PEPPER
dc.description.sponsorshipScottish Government Rural Affairs Food and Environment Strategic Research Programme
dc.description.statuspub
dc.eprint.idhttps://eprints.ucm.es/id/eprint/65854
dc.identifier.doi10.1016/j.envsoft.2020.104932
dc.identifier.issn1364-8152
dc.identifier.officialurlhttps://doi.org/10.1016/j.envsoft.2020.104932
dc.identifier.urihttps://hdl.handle.net/20.500.14352/8187
dc.issue.number104932
dc.journal.titleEnvironmental Modelling & Software
dc.language.isoeng
dc.page.final12
dc.page.initial1
dc.publisherElsevier
dc.relation.projectID(CGL 2017-84269-P)
dc.relation.projectID(ANR-17-EURE-0018)
dc.relation.projectID(ANR-18-CE32-0010-01)
dc.rights.accessRightsrestricted access
dc.subject.cdu574.5
dc.subject.cdu574:004
dc.subject.keywordModel documentation
dc.subject.keywordStandards
dc.subject.keywordModelling cycle
dc.subject.keywordReproducible research
dc.subject.keywordEnvironmental modelling
dc.subject.keywordScientific communication
dc.subject.ucmBioinformática
dc.subject.ucmEcología (Biología)
dc.subject.unesco2401.06 Ecología animal
dc.titleKeeping modelling notebooks with TRACE: Good for you and good for environmental research and management support
dc.typejournal article
dc.volume.number136
dspace.entity.typePublication

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