Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes

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dc.contributor.authorLiu, Yang
dc.contributor.authorJohnson, Matthew G.
dc.contributor.authorCox, Cymon J.
dc.contributor.authorMedina Bujalance, Rafael
dc.contributor.authorDevos, Nicolas
dc.contributor.authorVanderpoorten, Alain
dc.contributor.authorHedenäs, Lars
dc.contributor.authorBell, Neil E.
dc.contributor.authorShevock, James R.
dc.contributor.authorAguero, Blanka
dc.contributor.authorQuandt, Dietmar
dc.contributor.authorWickett, Norman J.
dc.contributor.authorShaw, A. Jonathan
dc.contributor.authorGoffinet, Bernard
dc.date.accessioned2024-01-26T00:31:39Z
dc.date.available2024-01-26T00:31:39Z
dc.date.issued2019-04-02
dc.descriptionThis study was made possible through financial support from the US National Science Foundation (grants DEB-1240045 to BG; DEB-1239992 to N.J.W.; DEB-1239980 to A.J.S.), from the FundaĂ§Ă£o para a CiĂªncia e a Technologia (FCT), Portugal (PTDC/BIA-EVF/1499/2014 to C.J.C.), as well as from the National Natural Science Foundation of China (grant 31470314 to Y.L.). DEB-1146168 to B.A. covered the specimen acquisition The sequences reported in this paper have been deposited in the NCBI Sequence Read Archive (SRA; accession no. SRP118564, SRP128062). Information about the target capture gene set, gene recovery statistics, multiple sequence alignments, phylogenetic trees are available from the Dryad Digital Repository: https://doi.org/10.5061/dryad.tj3gd75]. All other relevant data are available from the authors.
dc.description.abstractMosses are a highly diverse lineage of land plants, whose diversification, spanning at least 400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive early extinctions, late radiations, limited morphological variation, and conflicting signal among previously used markers. Here, we present phylogenetic reconstructions based on complete organellar exomes and a comparable set of nuclear genes for this major lineage of land plants. Our analysis of 142 species representing 29 of the 30 moss orders reveals that relative average rates of non-synonymous substitutions in nuclear versus plastid genes are much higher in mosses than in seed plants, consistent with the emerging concept of evolutionary dynamism in mosses. Our results highlight the evolutionary significance of taxa with reduced morphologies, shed light on the relative tempo and mechanisms underlying major cladogenic events, and suggest hypotheses for the relationships and delineation of moss orders.
dc.description.departmentDepto. de Biodiversidad, EcologĂ­a y EvoluciĂ³n
dc.description.facultyFac. de Ciencias BiolĂ³gicas
dc.description.refereedTRUE
dc.description.statuspub
dc.identifier.doi10.1038/s41467-019-09454-w
dc.identifier.issn2041-1723
dc.identifier.officialurlhttps://www.nature.com/articles/s41467-019-09454-w#Ack1
dc.identifier.relatedurlhttps://datadryad.org/stash/dataset/doi:10.5061/dryad.tj3gd75
dc.identifier.urihttps://hdl.handle.net/20.500.14352/95637
dc.journal.titleNAture Communications
dc.language.isoeng
dc.page.initial1485
dc.publisherSpringer
dc.rightsAttribution 4.0 Internationalen
dc.rights.accessRightsopen access
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/
dc.subject.cdu581.15
dc.subject.ucmBotĂ¡nica (BiologĂ­a)
dc.subject.unesco2417.01 BriologĂ­a
dc.titleResolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
dc.typejournal article
dc.type.hasVersionVoR
dc.volume.number10
dspace.entity.typePublication
relation.isAuthorOfPublication6001f9e8-bdd0-473d-a0bb-cc6b64020fa9
relation.isAuthorOfPublication.latestForDiscovery6001f9e8-bdd0-473d-a0bb-cc6b64020fa9
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